PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01027.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 462aa    MW: 51357.7 Da    PI: 4.8657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01027.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-151663148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WTt Ed +l ++v++ G g+W+++ +  g+ R++k+c++rw ++l
  Rsa1.0_01027.1_g00010.1 16 KGPWTTTEDAILTEYVRKRGEGNWNAVQKNSGLLRCGKSCRLRWANHL 63
                             79******************************99**********9986 PP

2Myb_DNA-binding506.9e-1669112146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +g+++++E++++++++++lG++ W++ a+ ++ gRt++++k++w++
  Rsa1.0_01027.1_g00010.1  69 KGSFSPDEEKIIIELHAKLGNK-WARMASQLP-GRTDNEIKNYWNT 112
                              799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0311163IPR017930Myb domain
SuperFamilySSF466893.36E-2813110IPR009057Homeodomain-like
SMARTSM007173.2E-111565IPR001005SANT/Myb domain
PfamPF002497.3E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-211771IPR009057Homeodomain-like
CDDcd001671.18E-81863No hitNo description
PROSITE profilePS5129424.72164118IPR017930Myb domain
SMARTSM007172.2E-1568116IPR001005SANT/Myb domain
PfamPF002495.4E-1569112IPR001005SANT/Myb domain
CDDcd001672.55E-1171112No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2472117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDGGEETSTA ERGLKKGPWT TTEDAILTEY VRKRGEGNWN AVQKNSGLLR CGKSCRLRWA  60
NHLRPNLRKG SFSPDEEKII IELHAKLGNK WARMASQLPG RTDNEIKNYW NTRMKRRQRA  120
GLPLYPHEIQ HLGIGNDDEF EFNSFQLPNQ DYPNHQNLIQ YTNSSNTSSS SSSFSSSSSQ  180
PPKELCLDPL ISTNPGLNQI PNMFSLYNNS FENDNNQFGF SLPLSSSSSS NELCKPDQLL  240
ELMSENLDTN VTSKKDIDGM SLMGDHETIP SYFSLGLDNT VLELPSNQTP TQLCTSNIML  300
DNNVHLDSPA GNSGLLDALL EESRALSRGG IFKDARVSSS GLCEDQDQGV EMDHFSSSHQ  360
SSFEANSNLY EKHNEPTMLK ATVDDDGDDI LKSLLNSFPS TTPLPDWYQT TEIQKEASPS  420
GILIGQHQRN SRVEPHKPPP SSSVDPMASL GSSYWGNMPG IY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141175107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634909.10.0PREDICTED: transcription factor MYB28-like
TrEMBLA0A0D3C3N30.0A0A0D3C3N3_BRAOL; Uncharacterized protein
STRINGAT2G32460.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.10.0myb domain protein 101